This page provides a summary list of all peer-reviewed journal and conference articles that I have authored or co-authored. A more detailed view, providing the abstracts and the list of other articles that cited my articles is available here.
Latest citations:
My Citations (based on Google Scholar)
Summary statistics as of August 2010:
Total no. of publications: 25
Total no. of citations: 432 (~44% increase since Aug 2009)
Total no. of non-self citations: 304
Total no. of self citations: 128
H-index: 11
Summary statistics as of August 2009:
Total no. of publications: 19
Total no. of citations: 301 (~49% increase since Aug 2008)
Total no. of non-self citations: 204
Total no. of self citations: 97
H-index: 11
Summary statistics as of August 2008:
Total no. of publications: 18
Total no. of citations: 202
H-index: 7
My research interests
26) Highly conserved influenza A sequences as T cell epitopes-based vaccine targets to address the viral variability
Tan PT, Khan AM, August JT.
Hum Vaccin. 2011 Apr 1;7(4)
PUBMED PMID: 21471731
Out link: Full-text
Impact Factor Year 2009: 1.94
No. of Citations: ?
25) T3SEdb: Data warehousing of virulence effectors secreted by the bacterial Type III Secretion System
Tay DMM*, Govindarajan KR*, Khan AM, Ong TYR, Samad HM, Soh WW, Tong M, Zhang F, Tan TW
BMC Bioinformatics. 2010; 11 Suppl 7:S4.
PUBMED PMID: 21106126
Out link: Full-text
Impact Factor Year 2009: 3.428
No. of Citations: ?
* Contributed equally
24) Cheminformatics-based drug design approach for identification of inhibitors targeting the characteristic residues of MMP-13 hemopexin domain
Kothapalli R, Khan AM, Basappa, Gopalsamy A, Chong YS and Annamalai L
PLoS One. 2010; 5(8): e12494.
PUBMED PMID: 20824169
Out link: Full-text
Impact Factor Year 2009: 4.351
No. of Citations: ?
23) Classification of dengue fever patients based on gene expression data using support vector machines.
Gomes AL*, Wee LJ*, Khan AM, Gil LH, Marques ET Jr, Calzavara-Silva CE, Tan TW.
PLoS One. 2010 Jun 23;5(6):e11267.
PUBMED PMID: 20585645
Out link: Full-text
Impact Factor Year 2009: 4.351
No. of Citations: 0
*Contributed equally
22) Dendritic cell mediated delivery of plasmid DNA encoding LAMP/HIV-1 Gag fusion immunogen enhances T cell epitope responses in HLA DR4 Tg mice
Simon GG, Hu Y, Khan AM, Zhou J, Salmon J, Chikhlikar PR, Jung KO, Marques ET, August JT.
PLoS One. 2010 Jan 5;5(1):e8574.
PUBMED PMID: 20052293
Out link: Full-text
Impact Factor Year 2009: 4.351
No. of Citations: 0
21) The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the Nat. Uni of Singapore
Lim SJ, Khan AM, De Silva M, Lim KS, Hu Y, Tan CH, Tan TW.
BMC Bioinformatics. 2009 Dec 3;10 Suppl 15:S12.
PUBMED PMID: 19958511
Out link: Full-text
Impact Factor Year 2009: 3.428
No. of Citations: 1
20) A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era.
Tan TW, Lim SJ, Khan AM, Ranganathan S.
BMC Genomics. 2009 Dec 3;10 Suppl 3:S36.
PUBMED PMID: 19958501
Out link: Full-text
Impact Factor Year 2009: 3.759
No. of Citations: 1
19) Conservation and variability of West Nile virus proteins
Koo QY, Khan AM*, Jung KO, Ramdas S, Miotto O, Tan TW, Brusic V, Salmon J, August JT.
PLoS One. 2009;4(4):e5352. Epub 2009 Apr 29.
PUBMED PMID: 19401763
Out link: Full-text
Impact Factor Year 2009: 4.351
No. of Citations: 0
*Contributed equally
18) Conservation and variability of dengue virus proteins: implications for vaccine design
Khan AM, Miotto O, Nascimento EJ, Srinivasan KN, Heiny AT, Zhang GL, Marques ET, Tan TW, Brusic V, Salmon J, August JT.
Virus Reviews and Research, 2008, 13 Supp 1, 74-75 & Proceedings of First Pan American Dengue Research Network Meeting, Recife, Brazil, July 2008
PUBMED PMID: N.A
Out link: N.A
Impact Factor Year 2009: N.A
No. of Citations: 0
17) Conservation and variability of dengue virus proteins: implications for vaccine design
Khan AM, Miotto O, Nascimento EJ, Srinivasan KN, Heiny AT, Zhang GL, Marques ET, Tan TW, Brusic V, Salmon J, August JT.
PLoS Negl Trop Dis. 2008 Aug 13;2(8):e272.
PUBMED PMID: 18698358
Out link: Full-text
Impact Factor Year 2009: 4.693
No. of Citations: 7 (total): 5 (non-self) & 2 (self)
16) Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
Zhang GL*, Khan AM*, Srinivasan KN, Heiny AT, Lee KX, Kwoh CK, August JT, Brusic V.
BMC Bioinformatics. 2008, 9(Suppl 1):S19
* Contributed equally
PUBMED PMID: In Process
Out link: Full-text
Impact Factor Year 2009: 3.428
No. of Citations: 6 (total): 4 (non-self) & 2 (self)
15) Automatic Synchronization and Distribution of Biological Databases and Software over Low-Bandwidth Networks among Developing Countries.
Sangket U, Phongdara A, Chotigeat W, Nathan D, Kim WY, Bhak J, Ngamphiw C, Tongsima S, Khan AM, Lin H, Tan TW.
Bioinformatics. 2008 Jan 15;24(2):299-301. Epub 2007 Nov 23.
PUBMED PMID: 18037613
Out link: Full-text
Impact Factor Year 2009: 4.926
No. of Citations: 2 (total): 0 (non-self) & 2 (self)
14) Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.
Heiny AT, Miotto O, Srinivasan KN, Khan AM, Zhang GL, Brusic V, Tan TW, August JT.
PLoS ONE. 2007 Nov 21;2(11):e1190.
PUBMED PMID: 18030326
Out link: Full-text
Impact Factor Year 2009: 4.351
No. of Citations: 33 (total): 28 (non-self) & 5 (self)
13) Temporal and antigenic analysis of dengue virus serotype 1 genome polyprotein sequences
Rajapakse M, Veeramani A, Gopalakrishnan K, Ananthanarayan S, Srinivasan KN, August JT, Khan AM, Brusic V.
International Conference on Biomedical and Pharmaceutical Engineering, 2006. Singapore, December 11, 2006.
Out link: Full-text
Impact Factor Year 2009: NA
No. of Citations: 0
12) A systematic bioinformatics approach for selection of epitope-based vaccine targets
Khan AM, Miotto O, Heiny AT, Salmon J, Srinivasan KN, Nascimento EJ, Marques ET, Brusic V, Tan TW, August JT.
Cell Immunol. 2006 Dec;244(2):141-147. Epub 2007 Apr 16.
PUBMED PMID: 17434154
Out link: Full-text
Impact Factor Year 2009: 2.698
No. of Citations: 15 (total): 9 (non-self) & 6 (self)
11) Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus.
Khan AM, Heiny A, Lee KX, Srinivasan K, Tan TW, August JT, Brusic V.
BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S4.
PUBMED PMID: 17254309
Out link: Full-text
Impact Factor Year 2009: 3.428
No. of Citations: 16 (total): 8 (non-self) & 8 (self)
10) Neural models for predicting viral vaccine targets.
Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V.
J Bioinform Comput Biol. 2005 Oct;3(5):1207-25.
PUBMED PMID: 16278955.
Out link: Full-text
Impact Factor Year 2009: NA
No. of Citations: 16 (total): 5 (non-self) & 11 (self)
9) MULTIPRED: a computational system for prediction of promiscuous HLA binding.
Zhang GL, Khan AM, Srinivasan KN, August JT, Brusic V.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W172-9.
PUBMED PMID: 15980449
Out link: Full-text
Impact Factor Year 2009: 7.479
No. of Citations: 70 (total): 51 (non-self) & 19 (self)
8) BioWare: A framework for bioinformatics data retrieval, annotation and publishing. Search and Discovery in Bioinformatics.
Koh JLY, Krishnan SPT, Seah SH, Tan PT, Khan AM, Lee ML, Brusic V.
27th Annual International ACM SIGIR Conference on Research and Development in IR. Sheffield, UK, July 29, 2004.
Out link: Full-text
Impact Factor Year 2009: NA
No. of Citations: 10 (total): 3 (non-self) & 7 (self)
7) Duplicate Detection in Biological Data using Association.
Koh JLY, Lee ML, Khan AM, Tan PTJ, Brusic V
2nd European Workshop on Data Mining and Text Mining for Bioinformatics.
Pisa, Italy, September 24, 2004.
Out link: Full-text
Impact Factor Year 2009: NA
No. of Citations: 19 (total): 16 (non-self) & 3 (self)
6) Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach.
Siew JP, Khan AM, Tan PT, Koh JL, Seah SH, Koo CY, Chai SC, Armugam A, Brusic V, Jeyaseelan K.
Bioinformatics. 2004 Dec 12;20(18):3466-80. Epub 2004 Jul 22.
PUBMED PMID: 15271784
Out link: Full-text
Impact Factor Year 2009: 4.926
No. of Citations: 9 (total): 5 (non-self) & 4 (self)
5) Prediction of class I T-cell epitopes: evidence of presence of immunological hotspots inside antigens.
Srinivasan KN, Zhang GL, Khan AM, August JT, Brusic V.
Bioinformatics. 2004 Aug 4;20 Suppl 1:I297-I302.
PUBMED PMID: 15262812
Out link: Full-text
Impact Factor Year 2009: 4.926
No. of citations: 30 (total): 14 (non-self) & 16 (self)
4) CysView: protein classification based on cysteine pairing patterns.
Lenffer J, Lai P, El Mejaber W, Khan AM, Koh JL, Tan PT, Seah SH, Brusic V.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W350-5.
PUBMED PMID: 15215409
Out link: Full-text
Impact Factor Year 2009: 7.479
No. of Citations: 11 (total): 7 (non-self) & 4 (self)
3) ANTIMIC: a database of antimicrobial sequences.
Brahmachary M, Krishnan SP, Koh JL, Khan AM, Seah SH, Tan TW, Brusic V, Bajic VB.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D586-9.
PUBMED PMID: 14681487
Out link: Full-text
Impact Factor Year 2009: 7.479
No. of Citations: 86 (t0tal): 84 (non-self) & 2 (self)
2) Molecular evolution and phylogeny of elapid snake venom three-finger toxins.
Fry BG, Wuster W, Kini RM, Brusic V, Khan A, Venkataraman D, Rooney AP.
J Mol Evol. 2003 Jul;57(1):110-29.
PUBMED PMID: 12962311
Out link: Full-text
Impact Factor Year 2009: 2.323
No. of Citations: 81 (total): 55 (non-self) & 26 (self)
Award won: Zuckerkandl prize
1) Bioinformatics for venom and toxin sciences
Tan PT, Khan AM, Brusic V.
Brief Bioinform. 2003 Mar;4(1):53-62. Review.
PUBMED PMID: 12715834
Out link: Full-text
Impact Factor Year 2009: 7.329
No. of Citations: 19 (total): 10 (non-self) & 9 (self)
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